Custom bioinformatic pipelines
- Sequence alignment and curation
- Structural modeling incl. membrane proteins and VDAC
- Predictive simulations and PDB rendering
- Reproducible, documented pipelines
- Decision-ready reports
Membrane protein structure prediction, predictive simulations, PDB rendering and bespoke bioinformatic pipelines built around your data and your stack.
Data-driven insights for molecular innovation.
We deliver bioinformatic analyses that combine physics-based protein modeling with generative AI. From sequence alignments and homology searches through structural modeling and molecular-dynamics work to PDB rendering, we close the gap between raw biological data and decisions that actually have consequences in the lab and in your program.
A particular focus is membrane proteins: structure prediction for transporters, channels and pore-forming proteins, VDAC analysis, and a deliberate approach to the well-known limitations of AlphaFold2 on flexible, lipid-embedded or oligomeric systems. Where prediction alone is not enough, we add physics-based refinement and curated structural references drawn from decades of structural biology work.
Typical deliverables include annotated structural models with confidence and quality metrics, interface and binding-site analyses, MD-based stability and dynamics profiles, and publication- or presentation-ready PDB renderings.
Everything we hand over is documented, reproducible and integration-friendly — as reports, structure files and, where useful, versioned workflows that your internal team can build on without vendor lock-in.
Related expertiseFive entry points into ProtoVela — from process and proof to the intro call.
Services, molecule classes and scientific application areas in detail.
Principles, optimisation targets and the eight-step design process.
Team, location and scientific leadership behind ProtoVela.
Field notes on AI, structural biology and protein design.
Book a free intro call and Project Assessment.